Portable plant intelligence

Phenotyping leaves the lab and goes wherever the crop is.

iPhonotype combines iPhone capture with a Mac Companion for validation, analysis, reconstruction, and 3D output. It runs on newer and older iPhones, supports both field and bench workflows, and keeps mobile capture lightweight while heavier processing stays on the Mac side.

Scan to Print Capture on iPhone, refine on Mac, and export ready-to-print color workflows.
Broad Device Support Works across newer LiDAR iPhones and older image-first devices.
Free Mobile Workflow Keep capture simple on the phone while the Mac Companion handles the heavier tasks.
Above-ground scan
LiDAR correction QR + geolocation Field-ready capture
Below-ground analysis
Petri-dish video decomposition Root segmentation + trait extraction
Above-ground traits Below-ground traits 3D scan to print Deep-learning color inference Industrial fruit measurement Older + newer iPhones Prusa + Snapmaker output QR tracking Geolocated field capture Free frontend workflow

Real workflows

Real images from the iPhonotype innovation stack.

These images were harvested from the project presentation and focus on iPhonotype-specific outputs: Mac Companion validation, captured scene reconstruction, tray-scale 3D geometry, and the pipeline that leads to multi-color printable assets.

Mac Companion validation workspace comparing benchmark masks, overlays, and imported captures.
Mac Companion validation Validation tools for comparing benchmark masks, imported captures, overlays, and plant-level outputs inside the companion workflow.
Single-plant captured scene reconstructed as a 3D model.
Single-scene reconstruction Captured plant scenes can be reconstructed into inspectable geometry for analysis, visualization, and downstream processing.
Textured tray-scale reconstruction of multiple plants.
Tray-scale textured output Beyond single plants, the system can assemble textured tray reconstructions for comparison across multiple samples.
3D reconstruction of plant trays generated from captured data.
3D reconstruction pipeline Captured scenes can be reconstructed into geometry, enriched with deep-learning color inference, and mapped into ready-to-print multi-color workflows for Prusa and Snapmaker.

Key capabilities

One capture system, multiple phenotyping realities.

Capture plants in growth chambers, factory lines, petri-dish assays, orchards, and field plots without switching platforms every time the biology changes.

3D scanning to multi-color printing

Recover canopy geometry, plant height, and scene structure, then use deep learning for color inference and printer mapping into ready-to-print outputs for Prusa and Snapmaker.

Root workflows

Ingest petri-dish photos or videos, decompose frames, stitch root coverage, and extract below-ground traits.

QR traceability

Track trays, petri dishes, and fruit lots with QR-linked sessions for repeat imaging and clean dataset provenance.

Geolocation-aware capture

Record where scans were acquired so field phenotyping stays connected to place, treatment, and route.

Runs on many iPhones

Use advanced iPhones for LiDAR-rich capture or older iPhones for lighter image-first workflows without changing the overall platform.

Frontend-first and free to run

The mobile experience is designed as a lightweight frontend, so users can run the iPhone side for free while the Mac Companion handles heavier processing.

Mac companion app

The heavy lifting happens where it should.

iPhone capture stays fast in the field and on the bench. The Mac Companion takes over for validation, organization, model runs, reconstruction, and export, so the mobile experience stays simple while the desktop side handles the deeper work.

These are real screenshots from the Mac Companion app, covering benchmark validation, scan organization, and above-ground phenotyping analysis.

  • Review scans, benchmark sets, overlays, and validation results.
  • Organize projects, trays, sessions, and imported datasets.
  • Run analysis for shoots, roots, fruit, and 3D reconstruction workflows.
  • Export print-ready 3D assets for downstream production and presentation.
Mac Companion benchmark alignment studio comparing benchmark masks and app masks.
Benchmark alignment studio Mask-first validation for benchmark comparisons, app overlays, and import quality control.
Mac Companion benchmark alignment studio showing benchmark RGB frame comparison.
RGB frame comparison Side-by-side review of benchmark RGB frames against imported app captures.
Mac Companion above-ground phenotyping screen with batch summary and segmented overlays.
Batch phenotyping Per-image summaries, CSV exports, and segmented overlays from above-ground analysis.
Mac Companion phenotyping screen for potato and soybean tray analysis.
Tray-level summaries Quick summaries for canopy area, leaf counts, and plant-by-plant tray breakdowns.
Mac Companion phenotyping screen for Arabidopsis tray analysis with many plant detections.
Dense tray analysis High-count tray workflows for Arabidopsis and other compact phenotyping layouts.
Mac Companion library view organizing flash drought scans and tray groups.
Workspace and scan library Organize projects, trays, sessions, and scan groups before moving into validation and downstream analysis.

Use cases

Built for research groups, agri-food operators, and field teams.

01

Research phenotyping

Track rosettes, seedlings, roots, and treatment responses across repeat sessions with benchmark-linked calibration, model evaluation, reproducible package exports, and optional multi-color 3D-printable outputs.

02

Agri-food quality workflows

Measure fruit geometry, surface condition, and object dimensions on benches or processing lines with QR-linked lots and Mac-side model orchestration.

03

Field phenotyping

Capture geolocated plant records in real environments on many classes of iPhone, then sync to the Mac Companion for deeper analysis, cloud processing, and curated dataset management.

Why this tool

Phenotyping should be portable, accessible, and easy to deploy.

Democratization of phenotyping

Replace single-purpose lab infrastructure with a platform that can move from controlled environments to industrial sites and real field conditions, while also producing shareable and printable 3D outputs with learned color mapping.

Broad device reach

Use the hardware people already carry, from advanced capture-capable iPhones to older models, then add deeper processing only where it matters with the Mac Companion.

Accessible cost model

A frontend-first mobile app plus the Mac Companion lowers the barrier to entry and lets users run the mobile workflow for free.

From scan to decision

Capture on iPhone. Reconstruct on Mac. Infer color. Print in multi-color.

iPhonotype bridges plant biology, machine vision, and operational usability so teams can move from mobile capture to trait insight, printable 3D outputs, deep-learning color mapping, and multi-color print preparation for Prusa and Snapmaker.

Contact & partnership

Working on crop science, 3D scanning, phenotyping infrastructure, or industrial measurement?

We’re actively looking to collaborate with research groups, greenhouse operators, agri-food companies, hardware partners, and phenotyping teams working on portable capture, analysis, and 3D plant workflows.

Research collaborations
Industrial pilots
3D printing outputs
Model deployment
Dataset partnerships